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GWAS-related eQTLs across different cancer types

We identified 337,131 eQTLs that overlap with GWAS linkage disequilibrium (LD) regions (r² ≥ 0.5).



e.g., "STAD"
e.g., "r²>= 0.8"
e.g., "rs2273"
Cancer type
eQTL type
tagSNP
LD
SNP ID
SNP position (hg19)
Gene symbol
Gene position (hg19)
Beta
t-stat
p-value
GWAS-Traits
THYM cis rs10935120 1 rs6439484 chr3:134249899 ANAPC13 chr3:134196547-134204865:- 0.58 8.01 2.88E-12 Height
THYM cis rs10935120 1 rs6439484 chr3:134249899 CEP63 chr3:134204575-134293852:+ 0.41 6.04 2.93E-8 Height
THYM cis rs10935120 1 rs6439487 chr3:134260860 ANAPC13 chr3:134196547-134204865:- 0.58 8.01 2.88E-12 Height
THYM cis rs10935120 1 rs6439487 chr3:134260860 CEP63 chr3:134204575-134293852:+ 0.41 6.04 2.93E-8 Height
THYM cis rs344081 1 rs6441104 chr3:156681441 LEKR1 chr3:156544076-156763918:+ -0.78 -4.18 6.6E-5 Bone mineral density
THYM cis rs9876781 1 rs6442117 chr3:48419897 TREX1 chr3:48501186-48509043:+ 0.28 4.49 2.0E-5 Longevity
THYM cis rs9876781 1 rs6442118 chr3:48440047 TREX1 chr3:48501186-48509043:+ -0.28 -4.38 3.02E-5 Longevity
THYM cis rs9876781 1 rs6442119 chr3:48440178 TREX1 chr3:48501186-48509043:+ -0.28 -4.36 3.32E-5 Longevity
THYM cis rs9876781 1 rs6442120 chr3:48464503 TREX1 chr3:48501186-48509043:+ -0.28 -4.23 5.28E-5 Longevity
THYM cis rs9876781 1 rs6442123 chr3:48500286 TREX1 chr3:48501186-48509043:+ -0.29 -4.28 4.47E-5 Longevity
THYM cis rs1401999 1 rs6443924 chr3:183679532 ABCC5 chr3:183637726-183735727:- 0.48 4.28 4.53E-5 Anterior chamber depth
THYM cis rs1401999 1 rs6443926 chr3:183706630 ABCC5 chr3:183637726-183735727:- 0.48 4.28 4.53E-5 Anterior chamber depth
THYM cis rs1401999 1 rs6443927 chr3:183718864 ABCC5 chr3:183637726-183735727:- 0.5 4.38 3.08E-5 Anterior chamber depth
THYM cis rs10461617 1 rs6450408 chr5:56098146 C5orf35 chr5:56205103-56213010:+ 0.74 8.92 3.44E-14 Type 2 diabetes
THYM cis rs10461617 1 rs6450409 chr5:56101399 C5orf35 chr5:56205103-56213010:+ 0.74 9.25 6.53E-15 Type 2 diabetes